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Update recipe for ViroConstrictor #51038

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merged 1 commit into from
Sep 30, 2024

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florianzwagemaker
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@florianzwagemaker florianzwagemaker commented Sep 30, 2024

Updated the dependencies in the recipe to avoid a broken install and updated the recipe maintainers list.


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Summary by CodeRabbit

  • New Features

    • Updated versioning for the ViroConstrictor package to version 1.
    • Standardized entry points for improved clarity.
  • Bug Fixes

    • Consolidated snakemake entry in the run requirements to avoid duplication.
  • Chores

    • Updated maintainership details in the recipe.

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coderabbitai bot commented Sep 30, 2024

📝 Walkthrough

Walkthrough

The pull request introduces several updates to the meta.yaml file of the ViroConstrictor package, including an increment in the version number, specification of a version range for the mamba dependency, and consolidation of the run requirements. Additionally, the entry points in the build section have been standardized, and changes have been made to the extra section regarding recipe maintainers.

Changes

Files Change Summary
recipes/viroconstrictor/meta.yaml - Version number updated from 0 to 1.
- mamba dependency updated to >=1.5.0, <2.0.0.
- Consolidated snakemake entry in run requirements.
- Standardized entry points in build section.
- Updated run_exports section.
- Maintainers updated: removed KHajji, added raaijmag, wolthuisr.

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@florianzwagemaker
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Sep 30, 2024
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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (2)
recipes/viroconstrictor/meta.yaml (2)

43-43: LGTM: Mamba dependency constraint added.

The addition of version constraints for the mamba dependency is a good practice. It helps ensure compatibility and reproducibility. The chosen range (>=1.5.0, <2.0.0) allows for minor updates while preventing potentially breaking changes from major version updates.

Consider adding a comment explaining the rationale behind this specific version range, especially if there are known compatibility issues with certain versions. This can be helpful for future maintenance.


21-22: LGTM: run_exports section added.

The addition of the run_exports section with {{ pin_subpackage('viroconstrictor', max_pin="x") }} is a good practice. It ensures that when ViroConstrictor is used as a dependency in other packages, it will be compatible with minor and patch updates but not major version changes. This aligns well with semantic versioning principles.

Consider adding a brief comment explaining the rationale behind this pinning strategy, especially if there are specific compatibility concerns that drove this decision. This can be helpful for future maintainers.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 2092e27 and 0224088.

📒 Files selected for processing (1)
  • recipes/viroconstrictor/meta.yaml (3 hunks)
🔇 Additional comments (2)
recipes/viroconstrictor/meta.yaml (2)

20-20: LGTM: Build number increment is appropriate.

The build number has been correctly incremented from 0 to 1. This is the proper approach when making changes to a package recipe without altering the package version itself.


66-67: LGTM: New maintainers added.

The addition of 'raaijmag' and 'wolthuisr' as recipe maintainers is a positive change. It can help with the long-term maintenance and support of the package.

The AI summary mentions that 'KHajji' was removed from the maintainers list, but this is not visible in the provided diff. Could you please verify if 'KHajji' was indeed removed? If so, ensure that this removal was intentional and approved by the relevant parties.

✅ Verification successful

Verification Complete: 'KHajji' Removed from Maintainers List

'KHajji' has been successfully removed from the maintainers list in recipes/viroconstrictor/meta.yaml. The addition of 'raaijmag' and 'wolthuisr' as new maintainers is confirmed.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the removal of 'KHajji' from the maintainers list

# Test: Check if 'KHajji' is present in the current version of the file
if grep -q "KHajji" recipes/viroconstrictor/meta.yaml; then
    echo "'KHajji' is still present in the maintainers list."
else
    echo "'KHajji' is not present in the current maintainers list."
fi

# Test: Check the git history for the removal of 'KHajji'
git log -p recipes/viroconstrictor/meta.yaml | grep -B 5 -A 5 "KHajji"

Length of output: 591

This was referenced Nov 7, 2024
@florianzwagemaker florianzwagemaker deleted the patch_viroconstrictor branch December 2, 2024 09:26
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