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Update recipe for ViroConstrictor #51038
Update recipe for ViroConstrictor #51038
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📝 WalkthroughWalkthroughThe pull request introduces several updates to the Changes
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (2)
recipes/viroconstrictor/meta.yaml (2)
43-43
: LGTM: Mamba dependency constraint added.The addition of version constraints for the mamba dependency is a good practice. It helps ensure compatibility and reproducibility. The chosen range (>=1.5.0, <2.0.0) allows for minor updates while preventing potentially breaking changes from major version updates.
Consider adding a comment explaining the rationale behind this specific version range, especially if there are known compatibility issues with certain versions. This can be helpful for future maintenance.
21-22
: LGTM: run_exports section added.The addition of the run_exports section with
{{ pin_subpackage('viroconstrictor', max_pin="x") }}
is a good practice. It ensures that when ViroConstrictor is used as a dependency in other packages, it will be compatible with minor and patch updates but not major version changes. This aligns well with semantic versioning principles.Consider adding a brief comment explaining the rationale behind this pinning strategy, especially if there are specific compatibility concerns that drove this decision. This can be helpful for future maintainers.
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📒 Files selected for processing (1)
- recipes/viroconstrictor/meta.yaml (3 hunks)
🔇 Additional comments (2)
recipes/viroconstrictor/meta.yaml (2)
20-20
: LGTM: Build number increment is appropriate.The build number has been correctly incremented from 0 to 1. This is the proper approach when making changes to a package recipe without altering the package version itself.
66-67
: LGTM: New maintainers added.The addition of 'raaijmag' and 'wolthuisr' as recipe maintainers is a positive change. It can help with the long-term maintenance and support of the package.
The AI summary mentions that 'KHajji' was removed from the maintainers list, but this is not visible in the provided diff. Could you please verify if 'KHajji' was indeed removed? If so, ensure that this removal was intentional and approved by the relevant parties.
✅ Verification successful
Verification Complete: 'KHajji' Removed from Maintainers List
'KHajji' has been successfully removed from the maintainers list in
recipes/viroconstrictor/meta.yaml
. The addition of 'raaijmag' and 'wolthuisr' as new maintainers is confirmed.🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the removal of 'KHajji' from the maintainers list # Test: Check if 'KHajji' is present in the current version of the file if grep -q "KHajji" recipes/viroconstrictor/meta.yaml; then echo "'KHajji' is still present in the maintainers list." else echo "'KHajji' is not present in the current maintainers list." fi # Test: Check the git history for the removal of 'KHajji' git log -p recipes/viroconstrictor/meta.yaml | grep -B 5 -A 5 "KHajji"Length of output: 591
Updated the dependencies in the recipe to avoid a broken install and updated the recipe maintainers list.
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
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Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
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...
being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}
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.Summary by CodeRabbit
New Features
Bug Fixes
snakemake
entry in the run requirements to avoid duplication.Chores